PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05393
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 422aa    MW: 46139.1 Da    PI: 8.6068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05393genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.5e-113056127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C +++rtG C++G +C+F+H+p
  PEQU_05393 30 PGEADCAYYLRTGLCRFGITCRFNHPP 56
                57899********************97 PP

2zf-CCCH38.51.9e-127599327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C+++++tGtCk+G++CkF+H++
  PEQU_05393 75 QPECQYYLKTGTCKFGPTCKFHHPK 99
                799********************96 PP

3zf-CCCH32.51.5e-10121145327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+ ++CkF+H++
  PEQU_05393 121 EKECAYYLRTGQCKFSNTCKFHHPQ 145
                 679********************97 PP

4zf-CCCH38.32.2e-12279305127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G+ C+F+H++
  PEQU_05393 279 PGEPECQFYMKTGDCKFGAVCRFHHPR 305
                 5799*********************96 PP

5zf-CCCH38.71.7e-12325351127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF+H++
  PEQU_05393 325 PGEPLCVFYSRYGICKFGPNCKFNHPM 351
                 589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7232957IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-52956IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-83156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-53357IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-67299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.59172100IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-107599IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-676101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-57898IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136118146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6118146IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8121145IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267278306IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5284306IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216324352IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
LASGADAESM WQMSLRVGET IDPGPYPERP GEADCAYYLR TGLCRFGITC RFNHPPNRKL  60
AVARMKGGYP ERVGQPECQY YLKTGTCKFG PTCKFHHPKD KAGITGRVQL NVLGYPLRPN  120
EKECAYYLRT GQCKFSNTCK FHHPQPSNAM LSLRGSPVYP SVQSPTAGQQ SLTGALTNWS  180
LSKASFISPR WQGSSSYAQL ILPQGLVQVP SWSSFPGQFG SASSTENQQQ NSGAAQFFGA  240
SHQTETSTVS SPSFSSFRFG SVPMGQYALQ RDNIFPERPG EPECQFYMKT GDCKFGAVCR  300
FHHPRERLIP APNCVLSPLG LPLRPGEPLC VFYSRYGICK FGPNCKFNHP MAAPMGILAY  360
NLSASSSPDV PVVRRLLGSS SAIPPLTFSS DGSLETSHGK SRHLALSDSQ QMDSGDENVE  420
SD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929825.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLF6GX270.0F6GX27_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-141zinc finger protein 1